Complete Genome Assembly of a multidrug-resistant Yersinia enterocoli... - SRA

SRX10338425: Complete Genome Assembly of a multidrug-resistant Yersinia enterocolitica Y72 from a 2019 outbreak in Sweden
1 OXFORD_NANOPORE (MinION) run: 8,046 spots, 90.9M bases, 21.9Mb downloads

Design: Purified genomic DNA was analyzed and quantified with 2100 NanoDrop Spectrophotometer and Qubit 2.0 (Thermo Scientific) and prepared according to manufacturer's instructions. R9 12-type Flow Cell (FLO-MIN106D) in the MinKNOW software on standard settings.

Submitted by: Uppsala university

Study: Complete Genome Assembly of a multidrug-resistant Yersinia enterocolitica Y72 from a 2019 outbreak in Sweden

PRJNA698800 • SRP310539 • All experiments • All runs

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Here, we report the complete genome of Yersinia enterocolitica bioserotype 4/O:3 strain Y72, a clinical strain isolated from a Swedish patient from a Yersinia outbreak in 2019. The genome consists of a 4,567 290-bp circular chromosome, a 71,773-bp virulence plasmid and 5681-bp plasmid. This isolate harbored a multi resistance cassette in the chromosome containing cat1A, aadA1, sul1 and a heavy metal resistant region. In addition, a plasmid encoding tet(B) conferring tetracycline resistance.

Sample:

SAMN17740595 • SRS8457871 • All experiments • All runs

Organism: Yersinia enterocolitica subsp. palearctica

Library:

Name: FAK26674

Instrument: MinION

Strategy: WGS

Source: GENOMIC

Selection: unspecified

Layout: SINGLE

Runs: 1 run, 8,046 spots, 90.9M bases, 21.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR13960195	8,046	90.9M	21.9Mb	2021-03-14

ID:: 13466370

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